do_x3dna Logo
  • do_x3dna for GROMACS
  • How to use GROMACS do_x3dna?
  • do_x3dna plugin for VMD
  • Install dnaMD
  • How to use dnaMD?
  • Speed up dnaMD with HDF5 file
  • DNA elasticity - Theory
  • DNA elasticity - Tutorial
  • dnaMD Python module Tutorial
    • Analysis of local base-pairs parameters
    • Analysis of local base-steps parameters
    • Analysis of local helical parameters
    • Analysis of major and minor grooves
    • Analysis of helical axis
    • Conformational wheel using backbone torsion angles
    • Using HDF5 file for rapid analysis
    • Calculate global and local elastic properties
  • dnaMD Python module
  • View on GitHub
do_x3dna
  • Tutorial
  • View page source

Tutorial

  • Analysis of local base-pairs parameters
  • Analysis of local base-steps parameters
  • Analysis of local helical parameters
  • Analysis of major and minor grooves
  • Analysis of helical axis
  • Conformational wheel using backbone torsion angles
  • Using HDF5 file for rapid analysis
  • Calculate global and local elastic properties
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