do_x3dna
latest
do_x3dna for GROMACS
How to use GROMACS do_x3dna?
do_x3dna plugin for VMD
Install dnaMD
How to use dnaMD?
Speed up dnaMD with HDF5 file
DNA elasticity - Theory
dnaMD Python module Tutorial
dnaMD Python module
View on GitHub
do_x3dna
Index
Edit on GitHub
Index
_
|
C
|
D
|
E
|
F
|
G
|
H
|
L
|
M
|
N
|
P
|
R
|
S
|
T
|
V
|
W
_
_calcEnergyBendStretchTwist() (dnaEY method)
_calcEnergyStretchTwist() (dnaEY method)
_calcLocalEnergy() (dnaEY method)
_openFile() (DNA method)
_set_mask() (DNA method)
_set_time() (DNA method)
C
calculate_2D_angles_bw_tangents() (DNA method)
calculate_angle_bw_tangents() (DNA method)
calculate_curvature_tangent() (DNA method)
calculateLocalElasticity() (dnaEY method)
calculateLocalElasticitySegments() (dnaEY method)
D
data (DNA attribute)
dev_parameters_vs_axis() (in module dnaMD.dnaMD)
DNA (class in dnaMD.dnaMD)
dnaEY (class in dnaMD.dnaEY)
dnaMD.dnaMD
module
E
esMatrix (dnaEY attribute)
esType (dnaEY attribute)
extractGlobalParameters() (dnaEY method)
extractLocalParameters() (dnaEY method)
F
filename (DNA attribute)
(dnaEY attribute)
G
generate_smooth_axis() (DNA method)
get_error() (in module dnaMD.dnaMD)
get_mean_error() (DNA method)
get_parameters() (DNA method)
getGlobalDeformationEnergy() (dnaEY method)
getLocalDeformationEnergy() (dnaEY method)
getLocalDeformationEnergySegments() (dnaEY method)
getLocalElasticityByTime() (dnaEY method)
getModulusByTime() (dnaEY method)
getStretchTwistBendModulus() (dnaEY method)
getStretchTwistModulus() (dnaEY method)
H
h5 (DNA attribute)
L
localDeformationVsBPS() (in module dnaMD.dnaMD)
M
mask (DNA attribute)
minimumPoint (dnaEY attribute)
module
dnaMD.dnaMD
N
num_bp (DNA attribute)
(dnaEY attribute)
num_step (DNA attribute)
P
parameter_distribution() (DNA method)
R
read_param_file() (in module dnaMD.dnaMD)
S
set_backbone_dihedrals() (DNA method)
set_base_pair_parameters() (DNA method)
set_base_step_parameters() (DNA method)
set_helical_axis() (DNA method)
set_helical_radius() (DNA method)
set_major_minor_groove() (DNA method)
setParametersFromFile() (in module dnaMD.dnaMD)
smooth_axis (DNA attribute)
startBP (DNA attribute)
(dnaEY attribute)
T
time (DNA attribute)
time_vs_parameter() (DNA method)
V
vector_angle() (in module dnaMD.dnaMD)
W
write_haxis_pdb() (DNA method)
Read the Docs
v: latest
Versions
latest
stable
Downloads
On Read the Docs
Project Home
Builds